GWAS - CEL to Intensity

source: penncnv wget http://www.openbioinformatics.org/penncnv/download/penncnv.latest.tar.gz wget http://www.openbioinformatics.org/penncnv/download/gw6.tar.gz from http://www.affymetrix.com/support/developer/powertools/index.affx wget http://www.affymetrix.com/Auth/support/downloads/library_files/genomewidesnp6_libraryfile.zip /sdc/analysis/apt-1.14.4.1-amd64-pc-linux/bin/apt-probeset-summarize \ --cdf-file /sdc/analysis/penncnv/lib/GenomeWideSNP_6.cdf \ --analysis quant-norm.sketch=50000,pm-only,med-polish,expr.genotype=true \ --target-sketch /sdc/analysis/penncnv/lib/hapmap.quant-norm.normalization-target.txt \ --out-dir out \ --cel-files out/listfile.test.txt
 * 1) Download the Affymetrix Power Tools (APT) software package
 * 1) decompressed files to the lib/ directory

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